PROJECT SUMMARY
Appendicular skeletal progenitors are generated when trunk lateral plate mesoderm undergoes an
epithelial-to-mesenchymal transition to generate mesenchymal skeletal progenitors that migrate
away from the body axis to form the limb buds. Deciphering the mechanism that stimulates the
generation of limb skeletal progenitors is important for understanding and treating appendicular
skeletal defects. Recent studies have shown that retinoic acid (RA), an active metabolite of vitamin
A, is required specifically for generation of forelimb buds which give rise primarily to forelimb
skeletal progenitors; studies on RA-deficient mutant mouse embryos demonstrated a blockage of
forelimb but not hindlimb budding. RA signaling is controlled by RA-synthesizing enzymes, including
retinol dehydrogenase 10 (RDH10) and retinaldehyde dehydrogenase 2 (ALDH1A2; RALDH2).
Interestingly, a human forelimb-specific role for RA was shown by a genome-wide association study
showing that severe osteoarthritis of the hand, but not hip or knee osteoarthritis, is associated with
human ALDH1A2 gene variants that exhibit lower expression in articular cartilage. RA directly
regulates gene transcription by functioning as a ligand for nuclear RA receptors that bind RA
response elements (RAREs) near target genes. Binding of RA controls recruitment of transcriptional
coregulators including nuclear receptor coactivator (NCOA) that recruits the histone
acetytransferase p300, and nuclear receptor corepressor (NCOR) that recruits the histone
methyltransferase PRC2. Aldh1a2-/- embryos (that completely lack RA activity) fail to induce
expression of Tbx5, the earliest known marker of forelimb development, whereas Rdh10-/- embryos
(with greatly reduced RA activity) exhibit delayed/reduced Tbx5 expression and stunted forelimbs.
We recently reported that Fgf8 needs to be directly repressed by RA and NCOR to allow Tbx5 gene
activation during forelimb initiation. As identification of direct RA target genes is slow when
proceeding one gene at a time, we performed a global analysis comparing ChIP-seq and RNA-seq
for wild-type vs Aldh1a2-/- trunk (where forelimb buds arise), thus identifying RA-regulated genes
that also have nearby RA-regulated deposition of H3K27ac (activation mark) or H3K27me3
(repression mark) near RAREs which is expected if a gene is a direct target of RA. We identified
new candidates for direct RA target genes; CRISPR knockout of two new candidate RA target
genes (Meis1 and Meis2) demonstrated they are needed for forelimb initiation. Here, we will
investigate Meis1/Meis2 gene function during forelimb initiation, identify a Tbx5 forelimb enhancer,
and initiate studies on transcriptional coregulators to uncover the mechanisms through which RA
stimulates forelimb initiation through regulation of Meis1/Meis2, Tbx5, Fgf8, or other factors.