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Small Molecule Signaling in Caenorhabditis elegans

Award Number: R35GM131877
ORGANIZATION: NATIONAL INSTITUTE OF GENERAL MEDICAL SCIENCES
OPDIV: NIH
AWARD CLASS: DISCRETIONARY
AWARD ACTIVITY TYPE: SCIENTIFIC/HEALTH RESEARCH (INCLUDES SURVEYS)
PERIOD OF PERFORMANCE START DATE: 05/01/2019
PERIOD OF PERFORMANCE END DATE: 01/31/2029

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Small Molecule Signaling in Caenorhabditis elegans - Project Summary The nematode Caenorhabditis elegans is one of the most important model organisms for biomedical research, because of its biological tractability and because much of its physiology and behavior relies on signaling pathways that are conserved in humans. The goal of this project is to complement the highly developed genomics and genetics of C. elegans with a comprehensive structural and functional characterization of its metabolome. In recent work we have shown that C. elegans utilizes small- molecule architectures of unanticipated diversity and complexity in endocrine and exocrine signaling that control almost every aspect of its life history, including development, aging, stress resistance, and a wide range of behaviors. One major focus of our investigations is the elucidation of the biosynthesis and perception mechanisms of newly identified small molecule signals, which will reveal how metabolism and conserved signaling pathways interact to control phenotypes. Of particular interest are (i) the roles of recently identified endogenous agonists of the nuclear receptor NHR-49, a key regulator of lipid metabolism and functional ortholog of vertebrate PPARα, (ii) male germline- dependent metabolites that accelerate development and aging via conserved pathways, including homologs of mammalian steroid receptors, and (iii) our recent discovery of a modular glucosides that appear to function as a “second layer” of neurotransmitter signaling. In addition, we will investigate the biological functions of a new family of nucleoside derivatives we discovered that may interact with purinergic signaling. Another focus area will be the influence of dietary bacteria on C. elegans small molecule signaling, motivated by our discovery of unexpected roles for bacterial metabolites, e.g. in modulating fat metabolism via NHR-49 or in serotonin signaling. Central to the proposed research is the use of synthetic samples and derivatives of identified signaling molecules for bioassays, mutant screens, and transcriptomic studies, as well as the in-house developed metabolomics platform (Metaboseek), which greatly accelerates compound identification and functional annotation. Successful conclusion of this project will provide a structural and functional annotation small molecule signaling networks in C. elegans, substantially increasing our understanding of conserved pathways that control development, aging and metabolism, as well as corresponding disease-relevant pathways in mammals. The small-molecule knowledge generated will not only enable future efforts aimed at more varied chemical genetic screens exploring additional aspects of the biology and ecology of C. elegans, but also of nematode species relevant in agriculture or medicine. Furthermore, methodology developed for characterizing C. elegans signaling molecules will facilitate similar studies toward structural and functional characterization of small molecule metabolites from other model organisms.


Issue Date FY	Funding FY	Legal Entity Name	Legal Entity Address	Legal Entity City	Legal Entity State	Legal Entity Zip Code	Legal Entity COUNTY	Legal Entity COUNTRY	Assistance Listing	Award Code	Budget Year	Action Date	Action Type	Action Amount

Issue Date FY: 2025 ( Subtotal = $567,706 )
2025	2025	BOYCE THOMPSON INSTITUTE FOR PLANT RESEARCH INC	533 TOWER RD	ITHACA	NY	14853	TOMPKINS	USA	Biomedical Research and Research Training	002	7	2/19/2025	NON-COMPETING CONTINUATION	$567,706
2025	2024	BOYCE THOMPSON INSTITUTE FOR PLANT RESEARCH INC	533 TOWER RD	ITHACA	NY	14853	TOMPKINS	USA	Biomedical Research and Research Training	000	6	11/14/2024	COMPETING CONTINUATION	$0
2025	2023	BOYCE THOMPSON INSTITUTE FOR PLANT RESEARCH INC	533 TOWER RD	ITHACA	NY	14853	TOMPKINS	USA	Biomedical Research and Research Training	001	5	1/17/2025	NON-COMPETING CONTINUATION	$0
														Subtotal = $567,706

Issue Date FY: 2024 ( Subtotal = $630,784 )
2024	2024	BOYCE THOMPSON INSTITUTE FOR PLANT RESEARCH INC	533 TOWER RD	ITHACA	NY	14853	TOMPKINS	USA	Biomedical Research and Research Training	000	6	1/19/2024	COMPETING CONTINUATION	$630,784
														Subtotal = $630,784

Issue Date FY: 2023 ( Subtotal = $764,245 )
2023	2023	BOYCE THOMPSON INSTITUTE FOR PLANT RESEARCH, INC.	533 TOWER RD	ITHACA	NY	14853	TOMPKINS	USA	Biomedical Research and Research Training	000	5	2/9/2023	NON-COMPETING CONTINUATION	$593,590
2023	2023	BOYCE THOMPSON INSTITUTE FOR PLANT RESEARCH INC	533 TOWER RD	ITHACA	NY	14853	TOMPKINS	USA	Biomedical Research and Research Training	001	5	8/4/2023	SUPPLEMENT FOR EXPANSION	$170,655
														Subtotal = $764,245

Issue Date FY: 2022 ( Subtotal = $593,590 )
2022	2022	BOYCE THOMPSON INSTITUTE FOR PLANT RESEARCH, INC.	533 TOWER RD	ITHACA	NY	14853	TOMPKINS	USA	Biomedical Research and Research Training	000	4	2/18/2022	NON-COMPETING CONTINUATION	$534,228
2022	2022	BOYCE THOMPSON INSTITUTE FOR PLANT RESEARCH, INC.	533 TOWER RD	ITHACA	NY	14853	TOMPKINS	USA	Biomedical Research and Research Training	001	4	7/22/2022	NON-COMPETING CONTINUATION	$59,362
														Subtotal = $593,590

Issue Date FY: 2021 ( Subtotal = $593,590 )
2021	2021	BOYCE THOMPSON INSTITUTE FOR PLANT RESEARCH, INC.	533 TOWER RD	ITHACA	NY	14853	TOMPKINS	USA	Biomedical Research and Research Training	000	3	3/19/2021	NON-COMPETING CONTINUATION	$593,590
														Subtotal = $593,590

Issue Date FY: 2020 ( Subtotal = $593,590 )
2020	2020	BOYCE THOMPSON INSTITUTE FOR PLANT RESEARCH, INC.	533 TOWER RD	ITHACA	NY	14853	TOMPKINS	USA	Biomedical Research and Research Training	000	2	2/12/2020	NON-COMPETING CONTINUATION	$593,590
														Subtotal = $593,590

Issue Date FY: 2019 ( Subtotal = $593,590 )
2019	2019	BOYCE THOMPSON INSTITUTE FOR PLANT RESEARCH, INC.	533 TOWER RD	ITHACA	NY	14853	TOMPKINS	USA	Biomedical Research and Research Training	000	1	4/15/2019	NEW	$593,590
														Subtotal = $593,590

Grand Total All Awards = $4,337,095

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Small Molecule Signaling in Caenorhabditis elegans

Award Number: R35GM131877

ORGANIZATION: NATIONAL INSTITUTE OF GENERAL MEDICAL SCIENCES

OPDIV: NIH

AWARD CLASS: DISCRETIONARY

AWARD ACTIVITY TYPE: SCIENTIFIC/HEALTH RESEARCH (INCLUDES SURVEYS)

PERIOD OF PERFORMANCE START DATE: 05/01/2019

PERIOD OF PERFORMANCE END DATE: 01/31/2029

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