This proposal focuses on the mechanisms of mammalian protein synthesis and ribosome-associated mRNA
surveillance (No-Go and non-stop decay (NGD and NSD, respectively)) and protein quality control pathways.
Translation is a cyclical process, consisting of initiation, elongation, termination and ribosome recycling. While
elongation is highly conserved, other stages differ significantly between kingdoms. Initiation is the most
complicated and regulated stage of mammalian translation involving a complex interplay between multiple
initiation factors (eIFs), whereas termination and recycling are intimately connected with cellular mRNA and
protein quality control systems that are induced by aberrant stalling of elongation complexes by e.g. stable
secondary structures, rare codons, damaged RNA bases (NGD), or the absence of a stop codon (NSD). Our
development of in vitro reconstitution of the entire mammalian translation process and recent integration of our
expertise with technical advances in cryo-electron microscopy made in the laboratory of J. Frank (HHMI,
Columbia University) now gives us a unique opportunity to close several critical gaps in understanding of the
mechanism of mammalian translation, to investigate physiologically important cases of translational regulation,
and to extend our studies to associated mRNA and protein quality control pathways. We will (i) address the
unresolved mechanistic aspects of the key stages in the canonical translation process (e.g. ribosomal
recruitment of Met-tRNAiMet and the role in it of ABC50, the mechanism of eIF4F-mediated attachment of 43S
ribosomal preinitiation complexes to capped mRNAs, the mechanism of action of DHX29 during ribosomal
scanning and kinetics of this process, and kinetics of mammalian termination), (ii) recapitulate in vitro and
determine mechanisms of specific cases of non-canonical initiation that have high physiological importance or
clinical relevance, such as initiation mediated by Leu-tRNALeu, repeat-associated non-AUG (RAN) translation,
initiation on distinct cellular IRESs and regulation of 5’-terminal oligopyrimidine (TOP) mRNAs, and (iii) develop
our recent advances concerning mechanisms of ribosome-associated mRNA and protein quality control,
including the role of peptidyl-tRNA hydrolase PTRH1 in release of ribosome-associated nascent chain peptidyl-
tRNAs arising from interrupted translation, and the mechanism of function of GTPBP1 and GTPBP2, members
of a relatively divergent group of translational GTPases. We will continue to use the in vitro reconstitution
approach, integrated with state-of-art biochemical techniques, as well as kinetic and structural methods in
collaboration with J. Frank (HHMI, Columbia University), Y. Hashem (IBMC Strasbourg, France), and M. Rodnina
(MPI Göttingen, Germany).