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Characterization of colonization and protein secretion by Pichia pastoris in the gastrointestinal tract of mice

Award Number: R16GM157998
ORGANIZATION: NATIONAL INSTITUTE OF GENERAL MEDICAL SCIENCES
OPDIV: NIH
AWARD CLASS: DISCRETIONARY
AWARD ACTIVITY TYPE: SCIENTIFIC/HEALTH RESEARCH (INCLUDES SURVEYS)
PERIOD OF PERFORMANCE START DATE: 09/01/2024
PERIOD OF PERFORMANCE END DATE: 08/31/2028

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Characterization of colonization and protein secretion by Pichia pastoris in the gastrointestinal tract of mice - PROJECT SUMMARY Rising expense associated with stability and delivery are significant obstacles for using therapeutic proteins to treat diseases. To resolve these issues, we propose to have the system that is making the therapeutic protein also be the direct delivery system. Delivering proteins directly from an expression system to a target tissue has the advantage of bypassing purification and eliminating stability issues during storage. Improvements to protein expression and secretion in Pichia pastoris make this yeast a prime candidate for this purpose. We have previously reported on P. pastoris’s ability to grow with cultured mammalian cells and secrete basic fibroblast growth factor to influence fibroblast growth. We have since tested P. pastoris’s ability to live in the gastrointestinal (GI) tract of C57BL/6J mice. The preliminary results showed that P. pastoris DNA was detectible in the murine feces 24 hours after the last treatment, while green fluorescent protein secreted by this strain of P. pastoris was detectible 72 hours after the last treatment. The fecal samples from P. pastoris-treated mice yielded no measurable levels of calprotectin, a biomarker of inflammation. Histological analysis of the small intestine, cecum, and colon showed no obvious signs of inflammation while enzyme-linked immunosorbent assay analysis of the GI tissues detected no increase in tumor necrosis factor alpha or interferon gamma. Furthermore, P. pastoris-treated mice gained similar weight to control mice and exhibited no noticeable change in behavior. In continuing with studies in animals, the goals of this proposal are to extend the duration of which P. pastoris can remain in the murine gut and to provide proof of concept that P. pastoris is capable of surviving and delivering recombinant proteins in the GI tract. Specific Aim 1 will determine if increasing dose and duration of treatment will allow P. pastoris to remain in the gut for a longer time. To further enhance P. pastoris survival, we will engineer a new strain of P. pastoris that will have affinity to mucin, an abundant protein in the mucus layer which lines the entire GI tract. The effects of these treatment strategies on the inflammatory response in the murine gut will also be assessed. In Specific Aim 2, we will use a hyper-lactose fed mouse model to determine if P. pastoris can secrete recombinant proteins into the gut. A diet of 70% lactose causes adult mice to lose weight due to an inability to digest lactose. Since lactase hydrolyzes lactose, a b-galactosidase (lactase)- secreting P. pastoris strain that lives in the GI tract would be expected to enhance lactose digestion. Prevention of weight loss in hyper-lactose fed mice would indicate that P. pastoris is secreting active lactase, suggesting that the yeast has potential of secreting other heterologous proteins in the gut of mice as well. These studies establish a foundational basis, upon which proteins made by P. pastoris can be directly administered to the GI tract of animals as therapeutic agents for treating diseases.


Issue Date FY	Funding FY	Legal Entity Name	Legal Entity Address	Legal Entity City	Legal Entity State	Legal Entity Zip Code	Legal Entity COUNTY	Legal Entity COUNTRY	Assistance Listing	Award Code	Budget Year	Action Date	Action Type	Action Amount

Issue Date FY: 2025 ( Subtotal = $168,750 )
2025	2025	UNIVERSITY OF PACIFIC	3601 PACIFIC AVE	STOCKTON	CA	95211	SAN JOAQUIN	USA	Biomedical Research and Research Training	000	2	8/13/2025	NON-COMPETING CONTINUATION	$168,750
														Subtotal = $168,750

Issue Date FY: 2024 ( Subtotal = $165,250 )
2024	2024	UNIVERSITY OF PACIFIC	3601 PACIFIC AVE	STOCKTON	CA	95211	SAN JOAQUIN	USA	Biomedical Research and Research Training	000	1	8/13/2024	NEW	$165,250
														Subtotal = $165,250

Grand Total All Awards = $334,000

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Characterization of colonization and protein secretion by Pichia pastoris in the gastrointestinal tract of mice

Award Number: R16GM157998

ORGANIZATION: NATIONAL INSTITUTE OF GENERAL MEDICAL SCIENCES

OPDIV: NIH

AWARD CLASS: DISCRETIONARY

AWARD ACTIVITY TYPE: SCIENTIFIC/HEALTH RESEARCH (INCLUDES SURVEYS)

PERIOD OF PERFORMANCE START DATE: 09/01/2024

PERIOD OF PERFORMANCE END DATE: 08/31/2028

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