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Computational Toolkit for Normalizing the Impact of CT Acquisition and Reconstruction on Quantitative Image Features

Award Number: R01EB031993
ORGANIZATION: NATIONAL INSTITUTE Of BIOMEDICAL IMAGING & BIOENGINEERING
OPDIV: NIH
AWARD CLASS: DISCRETIONARY
AWARD ACTIVITY TYPE: SCIENTIFIC/HEALTH RESEARCH (INCLUDES SURVEYS)
PERIOD OF PERFORMANCE START DATE: 09/01/2022
PERIOD OF PERFORMANCE END DATE: 05/31/2026

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Computational Toolkit for Normalizing the Impact of CT Acquisition and Reconstruction on Quantitative Image Features - Quantitative image features (QIFs) such as radiomic and deep features hold enormous potential to improve the detection, diagnosis, and treatment assessment of a wide range of diseases. Generated from clinically acquired Computed Tomography (CT) scans, QIFs represent small pixel-wise changes that may be early indicators of disease progression. However, detecting these changes is complicated by variations in how CT scans are acquired and reconstructed. Ensuring repeatable and reproducible QIFs is necessary for developing predictive models that achieve consistent performance across different clinical settings. This project's premise is that QIFs are sensitive to CT parameters such as radiation dose level, slice thickness, reconstruction kernel, and reconstruction method. The combined interactions among these parameters result in unique image conditions, each yielding its own QIF value. Moreover, some clinical tasks and algorithms are more sensitive to differences in QIF values than others. We hypothesize that a systematic, task-dependent framework to characterize the impact of variability in CT parameters and effectively mitigate them will result in more consistent QIF values and the performance of prediction models. Three interrelated innovations will be pursued in this work: 1) a novel framework for characterizing the impact of different acquisition and reconstruction parameters on QIFs and ML models using patient scans with known clinical outcomes in multiple domains; 2) a systematic approach for selecting an optimal mitigation technique and evaluating the impact of normalization; and 3) an open-source software toolkit that formalizes the process of CT normalization, addressing real- world use cases developed by academic and industry collaborators. In Aim 1, we will evaluate how multiple CT parameters influence QIF values and model performance. Utilizing metrics of agreement and a heat map- based visualization, we will determine under which image acquisition and reconstruction conditions the QIFs and model performance are consistent. In Aim 2, we will assess and enhance normalization techniques for mitigating the impact of differences in acquisition and reconstruction, targeting the set of imaging conditions that are most relevant to a clinical task. In Aim 3, we will engage a spectrum of external stakeholders to guide the development and adoption of a software toolkit called CT-NORM. Three distinct clinical domains will drive our efforts: lung nodule detection (which relies on identifying small regions of high contrast differences to identify nodules), interstitial lung disease quantification (which depends on characterizing texture differences), and ischemic core assessment (which relies on detecting low contrast differences in brain tissue). CT-NORM will provide the scientific community with an approach and a unified toolkit to characterize and mitigate the impact of reconstruction and acquisition parameters on QIFs and prediction model performance. By addressing critical sources of variability, we will improve the process of generating QIFs and facilitate the discovery of precise and reproducible imaging phenotypes of disease.


Issue Date FY	Funding FY	Legal Entity Name	Legal Entity Address	Legal Entity City	Legal Entity State	Legal Entity Zip Code	Legal Entity COUNTY	Legal Entity COUNTRY	Assistance Listing	Award Code	Budget Year	Action Date	Action Type	Action Amount

Issue Date FY: 2027 ( Subtotal = -$749 )
2027	2024	UNIVERSITY OF CALIFORNIA, LOS ANGELES	10889 WILSHIRE BLVD STE 700	LOS ANGELES	CA	90024	LOS ANGELES	USA	Discovery and Applied Research for Technological Innovations to Improve Human Health	000	3	10/28/2026	NON-COMPETING CONTINUATION	-$749
														Subtotal = -$749

Issue Date FY: 2024 ( Subtotal = $591,491 )
2024	2024	UNIVERSITY OF CALIFORNIA, LOS ANGELES	10889 WILSHIRE BLVD STE 700	LOS ANGELES	CA	90024	LOS ANGELES	USA	Discovery and Applied Research for Technological Innovations to Improve Human Health	000	3	6/14/2024	NON-COMPETING CONTINUATION	$591,491
														Subtotal = $591,491

Issue Date FY: 2023 ( Subtotal = $1,187,740 )
2023	2023	UNIVERSITY OF CALIFORNIA, LOS ANGELES	10889 WILSHIRE BLVD STE 700	LOS ANGELES	CA	90024	LOS ANGELES	USA	Discovery and Applied Research for Technological Innovations to Improve Human Health	001	2	6/1/2023	NON-COMPETING CONTINUATION	$596,464
2023	2023	UNIVERSITY OF CALIFORNIA, LOS ANGELES	10889 WILSHIRE BLVD STE 700	LOS ANGELES	CA	90024	LOS ANGELES	USA	Discovery and Applied Research for Technological Innovations to Improve Human Health	002	2	9/1/2023	SUPPLEMENT FOR EXPANSION	$288,554
2023	2022	UNIVERSITY OF CALIFORNIA, LOS ANGELES	10889 WILSHIRE BLVD STE 700	LOS ANGELES	CA	90024	LOS ANGELES	USA	Discovery and Applied Research for Technological Innovations to Improve Human Health	000	1	5/30/2023	NEW	$302,722
														Subtotal = $1,187,740

Issue Date FY: 2022 ( Subtotal = $603,562 )
2022	2022	UNIVERSITY OF CALIFORNIA, LOS ANGELES	10889 WILSHIRE BLVD STE 700	LOS ANGELES	CA	90024	LOS ANGELES	USA	Discovery and Applied Research for Technological Innovations to Improve Human Health	000	1	8/25/2022	NEW	$603,562
														Subtotal = $603,562

Grand Total All Awards = $2,382,044

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Computational Toolkit for Normalizing the Impact of CT Acquisition and Reconstruction on Quantitative Image Features

Award Number: R01EB031993

ORGANIZATION: NATIONAL INSTITUTE Of BIOMEDICAL IMAGING & BIOENGINEERING

OPDIV: NIH

AWARD CLASS: DISCRETIONARY

AWARD ACTIVITY TYPE: SCIENTIFIC/HEALTH RESEARCH (INCLUDES SURVEYS)

PERIOD OF PERFORMANCE START DATE: 09/01/2022

PERIOD OF PERFORMANCE END DATE: 05/31/2026

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