Wednesday, April 2, 2025 4/2/2025

CalR: A toolkit and repository for experiments of energy homeostasis using indirect calorimetry

Award Number: R01DK133948
ORGANIZATION: NATIONAL INSTITUTE OF DIABETES & DIGESTIVE & KIDNEY DISEASES
OPDIV: NIH
AWARD CLASS: DISCRETIONARY
AWARD ACTIVITY TYPE: SCIENTIFIC/HEALTH RESEARCH (INCLUDES SURVEYS)

Group Awards By:

View Award Description

CalR: A toolkit and repository for experiments of energy homeostasis using indirect calorimetry - Project Summary Modern indirect calorimetry systems allow for high-density multi-dimensional time-series measurements of components affecting body weight and energy homeostasis. Indirect calorimetry is used for understanding the factors influencing pathogenic changes to body weight—examples include weight loss with cancer cachexia, or weight gain with obesity. These indirect calorimetry systems generate a flood of raw data that requires time- consuming manual manipulation for formatting, data cleaning, quality control, and visualization. Beyond data handling, analysis of indirect calorimetry experiments requires specialized statistical treatment to account for differential contributions of fat mass and lean mass to metabolic rates. Surprisingly, no tools or resources exist to address these shortcomings. Comparisons between experiments are rarely performed due to the different types of instruments with varying units of measurement and ad hoc statistical treatments of data. To address this critical need, we propose the creation of a free online tool, CalR, that helps scientists quickly and efficiently analyze indirect calorimetry data by providing standardized methods for reproducible research and a site to store and aggregate datasets. The preliminary version of CalR we launched is a user-friendly but sophisticated web tool that uses a graphical user interface to import data files from different instruments, quickly visualize experimental results, and perform basic statistical analyses. After several years of iterative development, in addition to constructive feedback from a user survey, it is clear that additional functionality and statistical methods need to be developed to realize the potential of this project. The broad goal of this research is the development of a framework that delivers modern tools for the analysis of the physiological data affecting body weight. These new tools, built on the existing CalR software, will continue to be freely provided to the scientific community. Specific aims will establish three aspects of this framework: 1) New analysis features intended to improve prediction of body weight change, automatic determination of metabolic flexibility, improved determination of metabolic rates, and better visualizations. 2) New statistical methods incorporating additional covariates into analysis and a module to determine statistical power for metabolic experiments. 3) The development of a repository where indirect calorimetry data can be deposited and made broadly accessible for large-scale analysis. For each aim, we will develop and thoroughly test each component, after which we will provide a functional web tool online to share with the thousands of scientists who use our free software platform. These efforts will extract more nuanced information and will improve the interpretation of each experiment for users in all fields where body weight impacts disease processes.


Issue Date FY	Funding FY	Legal Entity Name	Legal Entity Address	Legal Entity City	Legal Entity State	Legal Entity Zip Code	Legal Entity COUNTY	Legal Entity COUNTRY	Assistance Listing	Award Code	Budget Year	Action Date	Action Type	Action Amount

Issue Date FY: 2025 ( Subtotal = $389,025 )
2025	2025	BETH ISRAEL DEACONESS MEDICAL CENTER, INC.	330 BROOKLINE AVE	BOSTON	MA	02215	SUFFOLK	USA	Diabetes, Digestive, and Kidney Diseases Extramural Research	000	4	1/8/2025	NON-COMPETING CONTINUATION	$389,025
														Subtotal = $389,025

Issue Date FY: 2024 ( Subtotal = $414,960 )
2024	2024	BETH ISRAEL DEACONESS MEDICAL CENTER, INC.	330 BROOKLINE AVE	BOSTON	MA	02215	SUFFOLK	USA	Diabetes, Digestive, and Kidney Diseases Extramural Research	001	3	5/17/2024	NON-COMPETING CONTINUATION	$25,935
2024	2024	BETH ISRAEL DEACONESS MEDICAL CENTER, INC	330 BROOKLINE AVE	BOSTON	MA	02215	SUFFOLK	USA	Diabetes, Digestive, and Kidney Diseases Extramural Research	000	3	1/24/2024	NON-COMPETING CONTINUATION	$389,025
2024	2023	BETH ISRAEL DEACONESS MEDICAL CENTER, INC.	330 BROOKLINE AVE	BOSTON	MA	02215	SUFFOLK	USA	Diabetes, Digestive, and Kidney Diseases Extramural Research	002	2	6/28/2024	SUPPLEMENT FOR EXPANSION	$0
														Subtotal = $414,960

Issue Date FY: 2023 ( Subtotal = $702,250 )
2023	2023	BETH ISRAEL DEACONESS MEDICAL CENTER, INC	330 BROOKLINE AVE	BOSTON	MA	02215	SUFFOLK	USA	Diabetes, Digestive, and Kidney Diseases Extramural Research	000	2	1/6/2023	NON-COMPETING CONTINUATION	$432,250
2023	2023	BETH ISRAEL DEACONESS MEDICAL CENTER, INC	330 BROOKLINE AVE	BOSTON	MA	02215	SUFFOLK	USA	Diabetes, Digestive, and Kidney Diseases Extramural Research	001	2	9/1/2023	SUPPLEMENT FOR EXPANSION	$270,000
														Subtotal = $702,250

Issue Date FY: 2022 ( Subtotal = $432,250 )
2022	2022	BETH ISRAEL DEACONESS MEDICAL CENTER, INC	330 BROOKLINE AVE	BOSTON	MA	02215	SUFFOLK	USA	Diabetes, Digestive, and Kidney Diseases Extramural Research	000	1	12/30/2021	NEW	$432,250
														Subtotal = $432,250

Grand Total All Awards = $1,938,485

Top

All Categories

About

Search

Reports

Data Submission

Award Information

CalR: A toolkit and repository for experiments of energy homeostasis using indirect calorimetry

Award Number: R01DK133948

ORGANIZATION: NATIONAL INSTITUTE OF DIABETES & DIGESTIVE & KIDNEY DISEASES

OPDIV: NIH

AWARD CLASS: DISCRETIONARY

AWARD ACTIVITY TYPE: SCIENTIFIC/HEALTH RESEARCH (INCLUDES SURVEYS)

Federal Websites

Department of Health & Human Services

HHS Operating Divisions

HHS Staff Divisions

Download A Document Viewer