Hazardous pollutants in the environment continue to threaten public health and environmental
safety. Human exposure to major contaminant classes, such as polyfluorinated compounds
(PFCs), hazardous organic compounds (HOCs), and heavy metals, has been linked to a variety of
diseases and is subject to stringent State and Federal environmental regulations.
Bioremediation is a low-cost and environmentally friendly approach with many successful
use-cases; however, conventional bioremediation technologies can suffer from unreliability, low
degradation rates, and incomplete degradation. As stakeholders to Superfund sites and other sites
with water or soil pollution urgently demand more efficient, less costly and more reliable
remediation technologies, it is critical to look to advancements in computational
modeling to develop next-generation, precision-engineered bioremediation technologies.
The proposed project builds on successful outcomes from Phase I in which a new computational
platform was designed and validated to accurately predict the bioremediation kinetics of
a multi-organism microcosm degrading a combination of HOCs in groundwater. The basis of
this platform is an approach called agent-based modeling (ABM), where the functions of
individual components (e.g. microorganisms) within complex ecosystems are used to predict and
optimize system-level properties (e.g. bioremediation kinetics).
In this Phase II project, the novel computational platform developed in Phase I is
further improved with a machine learning component that leverages bioinformatics
databases to develop rationally tailored microbiomes for degrading complex pollutant
mixtures. Iterative experimental validation of model outputs is conducted using an innovative
materials science platform that maintains the relative concentration of different species in the
microbiome constant within the multi-zone treatment barrier (in-situ) or multi-zone bioreactor
(ex-situ). The project includes focused development of a prototype for one bioremediation use-case,
which is directly compared to a conventional (non-precision) bioremediation system treating
actual contaminated groundwater. This will be performed in order to assess and quantify
the expected technical and economic benefits of harnessing the project's novel computational
platform in biotechnology development.
The broad, long-term impact of the proposed project will be to transform the development and
implementation of bioremediation by integrating advancements in computational modeling, machine
learning, bioinformatics, and materials science. By leveraging novel tools across disciplines, the
project will accelerate the development of more precise, reliable and inexpensive technologies for
environmental remediation. The successful outcome of the proposed project will also provide new
collaborative opportunities for industry and academia to more rapidly address the remediation of
high-priority pollutants in the environment, and ultimately help mitigate the effects of hazardous
pollutants on communities impacted by the presence of environmental contamination.