PROJECT SUMMARY
The aim of this Phase II proposal is to develop a rapid, easy-to-use, and inexpensive multi-sample diagnostic
system to identify sexually transmitted infection (STI) pathogens, such as Chlamydia trachomatis (CT) and
Neisseria gonorrhoeae (NG) in non-traditional healthcare settings. The features of our system will likely qualify
it to be a CLIA-waived CT/NG test. The sensitivity and specificity to be achieved using this prototype type
assay will be comparable with those of current laboratory-based molecular tests. This would present a major
advancement in clinical diagnostics for STIs. According to the CDC, chlamydia and gonorrhea, caused by C.
trachomatis and N. gonorrhoeae, are the two most frequently reported STIs in the US and likely the rest of the
world. These STIs are often under-diagnosed, leading to delayed treatment, continued spread and higher
public healthcare costs (~$16 billion annually). As a result of their prevalence and long term health
consequences, there is a need for rapid and sensitive methods of detecting STIs in order for patients to get
results and treatment immediately. It is important that patients receive results and initial consultation or
treatment during the first patient visit, as they rarely return for a second visit. Point-of-care (POC) tests are an
important strategy to address the STI epidemic, and because many affected by STIs (young and/or poor) often
have limited access to traditional healthcare, POC tests that can be performed in non-traditional settings (e.g.,
university clinics, community public health care clinics, jails, and detention centers) could greatly reduce STIs.
The system we propose to further develop will combine AI Biosciences, Inc.’s novel assay cartridge, low-cost
automatic platform inspired by 3D printer technology, and a rapid real-time thermal cycler to form a multi-
sample system for use in non-traditional healthcare settings. A low-cost self-contained nucleic acid extraction
and purification cartridge will be developed to perform a 10 min. extraction process for 6 samples. The
extracted NA samples will then be eluted and amplified using shuttle thermal cycler to perform multiplexed
real-time polymerase chain reaction (PCR) for CT and NG targets (15 min for 40 cycles). We plan to optimize
the assay and disposable to meet the needs of non-traditional healthcare settings, improve the system for
ease-of-use, and minimize risk of erroneous result. We will complete prototype system validation and
verification as well as determine analytical sensitivity and specificity of the CT/NG assay. The proposed work
will be carried out in collaboration with a STI expert in the US. Our proposed technologies are highly suitable
for parallel, automated processing. This is a substantial advantage over other integrated systems being
developed as most can only process one sample at a time, requiring the purchase of several modules in order
to meet the throughput demand in most point-of-care or near-patient settings. The successful development
and commercialization of our medium-throughput technology will impact how molecular diagnostic assays are
implemented in non-traditional healthcare settings.