PROJECT SUMMARY ABSTRACT
Focal Adhesion Kinase (FAK) is a major cancer drug target that is overexpressed in multiple tumor types. FAK
is a critical regulator of tumor survival, invasion, proliferation, metastasis, and immune evasion. Current FAK
inhibitors that target the ATP-binding pocket of the kinase domain do no effectively inhibit FAK in cancer because
FAK also functions as a scaffolding protein. The Focal Adhesion Targeting (FAT) domain of FAK is an interesting
alternative drug target due to its requirement for FAK localization, activity, and downstream effects. Disruption
and mutation of the FAT domain causes significant effects on tumor cell apoptosis, proliferation, invasion, and
metastasis. Specifically, the FAT domain interacts with the alpha helical LD2 and LD4 motifs of Paxillin to
promote its biological effects. The structure of the FAT-Paxillin complex has been solved by x-ray crystallography
however has been challenging to target with small molecules. In this project, we will use hydrocarbon stapled
alpha helical peptides that have the advantage of enhanced proteolytic stability, cell permeability, and potent
inhibition of the entire protein interaction interface. We have preliminary data of Stapled Peptide 3 showing low
micromolar inhibition of FAK-Paxillin binding and NMR/SPR data validating the binding site of the peptide. In the
first specific aim, we will perform structure-activity relationships (SAR) on stapled alpha helical peptides for
enhanced binding and competitive inhibition. We will perform SAR on stapled peptides by changing hydrocarbon
stapling strategy, modifying N- and C-terminal amino acids, and adding alternative amino acids. In addition, we
will utilize molecular modeling to optimize peptide-protein contacts, synthesize stapled peptides of homologous
peptide sequences, and characterize biophysical/biochemical properties of stapled peptides. In the second
specific aim, we will characterize and optimize lead peptides for cellular effects. We will perform robust assays
to measure cell permeability of stapled peptides, characterize peptides for protease resistance and effects on
membrane lysis, and test peptides in cellular efficacy assays to assess the effects of stapled peptides on cancer
cells. In the third specific aim, we will test lead peptides with in vitro DMPK assays and preliminary in vivo efficacy
models. We will characterize peptides using plasma binding, metabolic stability, and CYP inhibition/assays. We
will also test lead peptides in mouse xenograft models alone and in combination with chemotherapy. In all, these
specific aims will be used to discover peptide inhibitors of FAK non-catalytic function that can be the basis for
future clinical development.